Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTGAAGTCAGCTAAATCATCACTTCCGCCTCTTAAAAGCCCCATGGCAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAGgtacattttatctattatatagttttacatttttgtgtcatgcttttttgaaacctaatgcgaagtattcttcctttag

Basic information

species Glycine max
transcript GLYMA18G47880.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47880.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 4
TGCTGTGAAGTCAGCTAAATCATCACTTCCGCCTCTTAAAAGCCCCATGGCAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAGgtacattttatctattatatagttt--tacatttttgtgtcatgcttttttgaaacctaatgcgaagtattct-tcctttag------------------------------------------
|||||  |||||| | || ||||| |  || | ||||||||||||||||||||| |||||||||||||| || | |||   ||||||  | |||||||||||   | || ||||     |  |||  | || | ||   | ||  |||   ||    |  |       |||   |||   ||                                          
TGCTGCCAAGTCAACCAATTCATCGCACCCACGTCTTAAAAGCCCCATGGCAGGCACATTCTACCGAAGCCCAGGACCCAATGAACCGCCATTTGTGAAGgtgattcttctctagctagtgatttagttcaatctta-ataatcatttcaggatgattggtataggccatttaatccagcagtacttttttattcagcttacatgaggacctttctcattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722483|gb|BW668758.1|BW668758
EST:     CAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAG                         GTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATG
genomic: CAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTTCCTTTGTGAAGgtacatttta ... cttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATG