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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatacttagtactactttaaattacataatttttataaaaaaatggtatggaattttattcatttacatactcttcatttcatgggcagCTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATAAGATAGATCCACTTGCAGAGAAGGCAGTTATTGAGATTAAAAAGCAGTA

Basic information

species Glycine max
transcript GLYMA18G47420.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47420.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G01230.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagaatac-ttagtactactttaaattacataatttttataaaaaaatggtatggaattttattcatttacatactcttcatttcatgggcagCTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATAAGATAGATCCACTTGCAGAGAAGGCAGTTATTGAGATTAAAAAGCAGTA
||||| | ||  | || || ||   | |    |  ||| | |       |  |  || ||  | |       |||   ||  ||   |    ||| |||| |  |  | |||||||| ||  |||| ||||||||||| || ||| |||| |||||| ||||||||||||| || |||||||| || || || ||
gtaagtacacactggttcttctcagactcttgttttttctttc------tatttagggataatgt-------catgacctaaatgaaaccaacagGTTTTGTACTAATTCACACGGTGCCAATGCTTTATGAGAAGTATGAAGATGAGATTGATCCAATTGCAGAGAAGGCTGTGATTGAGATGAAGAAACATTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256005|gb|BQ452893.1|BQ452893
EST:     TCTGTCAATTGTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAA                         CTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACCATGATA
genomic: TCTGTCAATTGTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAAgtaagaatac ... tcatgggcagCTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATA
EST: gi|193414894|gb|FK378762.1|FK378762
EST:     GTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAA                         CTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATA
genomic: GTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAAgtaagaatac ... tcatgggcagCTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATA
EST: gi|193554364|gb|FK516349.1|FK516349
EST:     TCTGTCAATTGTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAA                         CTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATA
genomic: TCTGTCAATTGTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAAgtaagaatac ... tcatgggcagCTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATA
EST: gi|298169425|gb|HO020785.1|HO020785
EST:     TCTGTCAATTGTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAA                         CTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATA
genomic: TCTGTCAATTGTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAAgtaagaatac ... tcatgggcagCTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATA
EST: gi|10236830|gb|BE805718.1|BE805718
EST:     TCTGTCAATTGTGGGGAACTGGTGCAATCTCTTGACCCTGTTCTACATAA                         CTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATA
genomic: TCTGTCAATTGTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAAgtaagaatac ... tcatgggcagCTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaaaaaatggtatggaattttattcatttacatactcttcatttcatgggcagCTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATAAGATAGATCCACTTGCAGAGAAGGCAGTTATTGAGATTAAAAAGCAGTA
                                    ctcttcatttc  CT-rich tract
                 aattttattcatttac  TA-rich tract