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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGACTCCGAAAAAACCGTTACTTCCTCCGTTAAGGATAAGGTTTTTCGCCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaactttttttttgttcattttttcttgctcacttatttttgttgtcgttttattgcgttttgggttttgtgaacagattcaatgtgggaatgttgt...

Basic information

species Glycine max
transcript GLYMA18G47420.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179899|gb|HO025114.1|HO025114
EST:     CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|17963423|gb|BM270172.1|BM270172
EST:     CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|208315190|gb|GE112664.1|GE112664
EST:     CTCTTCGGAAGGGTAGAGACTCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CTCTTCGGAAGGG-AGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|298176130|gb|HO015535.1|HO015535
EST:     CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|207826282|gb|GD799421.1|GD799421
EST:     CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|298177074|gb|HO023435.1|HO023435
EST:     CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|23057429|gb|BU578103.1|BU578103
EST:     CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|298169425|gb|HO020785.1|HO020785
EST:     CGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|7926301|gb|AW832327.1|AW832327
EST:     CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|11687897|gb|BF595573.1|BF595573
EST:     CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
EST: gi|298180408|gb|HO021961.1|HO021961
EST:     CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAAC                         CTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG
genomic: CCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACgtaaaacttt ... tattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTG