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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTGCAAGTTGCGTCTGCATTGAGAATTGAAGTCAACCGGGGATTTGCTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTGgtgtgtaacttaataatttgttgacaccattaaatgcatactaaatagaagattttttataagtaatatctacaatgtttttgggccaattgattgtaac...

Basic information

species Glycine max
transcript GLYMA18G47420.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256005|gb|BQ452893.1|BQ452893
EST:     CTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTG                         GTTATTGCTAGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATTTC
genomic: CTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTGgtgtgtaact ... ttgatgttagGTTATTGCTAGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATTTC
EST: gi|193554364|gb|FK516349.1|FK516349
EST:     TGTTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTG                         GTTATTGCTAGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATTTC
genomic: TG-TTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTGgtgtgtaact ... ttgatgttagGTTATTGCTAGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATTTC
EST: gi|298169425|gb|HO020785.1|HO020785
EST:     CTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTG                         GTTATTGCTAGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATTTC
genomic: CTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTGgtgtgtaact ... ttgatgttagGTTATTGCTAGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATTTC
EST: gi|11687897|gb|BF595573.1|BF595573
EST:     CTGGATTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTG                         GT-ATTGCTAGCG
genomic: CTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTGgtgtgtaact ... ttgatgttagGTTATTGCTAGCG
EST: gi|10236830|gb|BE805718.1|BE805718
EST:     CTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTG                         GTTATTGCTAGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATCTC
genomic: CTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTGgtgtgtaact ... ttgatgttagGTTATTGCTAGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCCTGCAAGTTGCGTCTGCATTGAGAATTGAAGTCAACCGGGGATTTGCTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTGgtgtgtaacttaataatttgttgacaccattaaatgcatactaaatagaagattttttataagtaatatctacaatgtttttgggccaattgattgtaac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA