1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctctcatagttacattcaattataattaaatgtttaatggaaaaggcattgcaatattttgactgagattatttgtaacactttgatatattgttgtagaTTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTGATCTGTATCGAAGCTTTGGGTTTGATACCCAGCCAGTCCTCATTGGGCT
species | Glycine max |
transcript | GLYMA18G47190.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGGACACTGGAAGCTCAACCATACTGTGTACACGTTTGTTGCTATGCAGA TTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTGEST: gi|192305931|gb|FG993591.1|FG993591
genomic: GGGACACTGGAAGCTCAACCATACTGTGTACACGTTTGTTGCTATGCAGGtttgtgtaat ... ttgttgtagaTTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTG
EST: GGGACACTGGAAGCTCAACCATACTGTGTACACGTTTGTTGCTATGCAGA TTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTGEST: gi|26058879|gb|CA801793.1|CA801793
genomic: GGGACACTGGAAGCTCAACCATACTGTGTACACGTTTGTTGCTATGCAGGtttgtgtaat ... ttgttgtagaTTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTG
EST: GGGACACTGGAAGCTCAACCATACTGTGTACACGTTTGTTGCTATGCAGA TTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTGEST: gi|105634970|gb|DW247718.1|DW247718
genomic: GGGACACTGGAAGCTCAACCATACTGTGTACACGTTTGTTGCTATGCAGGtttgtgtaat ... ttgttgtagaTTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTG
EST: ACACGTTTGTTGCTATGCAGA TTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTG
genomic: ACACGTTTGTTGCTATGCAGGtttgtgtaat ... ttgttgtagaTTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTG
gcattgcaatattttgactgagattatttgtaacactttgatatattgttgtagaTTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTGATCTGTATCGAAGCTTTGGGTTTGATACCCAGCCAGTCCTCATTGGGCT
tttgatatattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctcatagttacattcaattataattaaatgtttaatggaaaaggcattgcaatattttgactgagattatttgtaacactttgatatattgttgtagaTTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTGATCTGTATCGAAGCTTTGGGTTTGATACCCAGCCAGTCCTCATTGGGCT
- - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgactg