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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattttggtgtggtatttatgaagtacgaacccttctttgccaattgtaaaattgctatttgatgtctattgattacagATATCAGGAGATTTTATGACAATAGCCAGTCTCAATGCTGAGAATGAAATACTGCATACCCTTGCCTTTTTAGCTGGGGTGATGATTTGGTCACAGG

Basic information

species Glycine max
transcript GLYMA18G47190.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47190.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 3'ss of exon 3
----------------gtgagattttggtgtggtatttatgaagtacgaacccttctttgccaattgtaaaattgctatttgatgtctattgattacagATATCAGGAGATTTTATGACAATAGCCAGTCTCAATGCTGAGAATGAAATACTGCATACCCTTGCCTTTTTAGCTGGGGTGATGATTTGGTCACAGG
                ||| |||| || |  || |      |    | |||       |||  |    | |||||        ||  |  ||| | |||| ||||||||| ||| |     |||   |  | ||||| |||||||| ||||||||||||||||| || |||||||| || ||||||||||||||| 
gtaagtgaatgcatttgtg-gattatgata-ggcaccccctaccccccaacatacagatgcatacaaaataattgtgcccatttgctttgtgactgcagAAATCAGGAGACTTTCTAGTGGTAGTTGGCTTAAATGCAGAGAATGAGATACTGCATACCCTTGCGTTCTTAGCTGGTGTTATGATTTGGTCACAG-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgaacccttctttgccaattgtaaaattgctatttgatgtctattgattacagATATCAGGAGATTTTATGACAATAGCCAGTCTCAATGCTGAGAATGAAATACTGCATACCCTTGCCTTTTTAGCTGGGGTGATGATTTGGTCACAGG
                                           tattgat  putative branch site (score: 3)
                       taaaattgctattt  TA-rich tract