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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAACAAGGttcgtattcttccttcaaattcaaccatccatctattatttcattcatgtttttagttcactccttttattttgatttgacgtctcattttgtaatattg...

Basic information

species Glycine max
transcript GLYMA18G47190.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47190.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G813909_T01 (Zea mays), 5'ss of exon 5
-TAACTGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAACAAGGttcgtattcttccttcaaattcaaccatccatctattatttcattcatgtttttagttcactccttttattttgatttgacgtctcattttgtaa-tattg---------------------------------------------------------------------------------
 | || || ||||| || ||||| || ||||||||||| || ||||| || |||||||||||||||||  || |  |   ||    ||   || |  || | ||  |   |    ||     |   |  | ||  | ||||       |     |||| ||| || ||                                                                                 
ATTACAGACTTGCCGTTCTCTCTCTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgtgt-tcatatttttttgtttttccttgtatttgttgctagctaggggta---ggaatatacattgaaatttggcaacttgcagtgttttataactactgaagtaactgggcttatgaatttcttatcttcattttcctgatacttttatactgagatttctattgcttcatgccttgtag

upper sequence: GLYMA18G47190.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G702159_T01 (Zea mays), 5'ss of exon 5
-TAACTGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAACAAGGttcgtattcttccttcaaattcaaccatccatctattatttcattcatg-tttttagttcactccttttattttgatttgacgtctcattttgtaatattg-
 | || || ||| | || ||| | || ||||||||||| || ||||| || ||||||||||||||||| |||   | | ||  || ||      |   |  | ||  |         ||| |  || |    |   |  |||       || | ||  ||| | | |  
ATTACAGACTTGTCGTTCTCTATTTATTCAACTTTTGTTATAGAGGCTCGACATGGTTTTAACAAGgtgcgttcacattctctaattttccttttattttcactagctaggcaggaatttatgtttgaaaattggcaacttg---cagtgtttgataatgttagactac

upper sequence: GLYMA18G47190.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G01320.1 (Arabidopsis thaliana), 5'ss of exon 5
-TAACTGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAACAAGGttcgtattcttccttcaaattcaaccatccatctattatttcattcatgtttttagttcactc--cttttattttgatttgacgtctcattttgtaatattg
 | ||||||||||| |||||| ||||||||||||| ||||| ||| | || ||||| || ||||| ||  ||  | || |    | | |       | |   || ||| ||    | | |   || | |   ||| ||  ||   |||||                   
ATCACTGATTTGCCATTTTCTTTGTACTCAACTTTCGTGATCGAGTCTCGGCATGGGTTCAACAAAgtatgtcgtatttccaacactaccttgtgacttacgtttttttatcagagatgtggattaaatttgcttctaaattctgttgacag-----------------

upper sequence: GLYMA18G47190.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 5
-TAACTGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAACAAGGttcgtattcttccttcaaattcaaccatccatctattatttcattcatgtttttagttcactccttttattttgatttgacgtctcattttgtaatattg-----
 | ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| |||||| | |||| |  ||        || | | ||||| ||  | |||| | |       |   |    ||| | | | ||  ||| | || |||      
ATTACTGATTTGCCATTTTCTCTATACTCAACTTTTGTGATTGAGGCCCGCCATGGTTTCAACAAAgtttgtattcattcttctatctccttatcatatttgtgatttc-tttgttttttgaatctgtatttggaa----gatctaa-ggcttgtttggcaacattttttaa