1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
catgttgttgtgcttttacagtattacccttgtcttgtttcgacatccatgcttattatctcaatctagggtttggaattttttttgcagaGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATCGATTATTCCGATCCCAA
species | Glycine max |
transcript | GLYMA18G47180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTTCTCAAACCCTCCACTGTTGTTTCTCCATTCCAGTTCAATCAGCAGA GAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCTAAAGGCTEST: gi|10235578|gb|BE804466.1|BE804466
genomic: CGTTCTCAAACCCTCCACTGTTGTTTCTCCATTCCAGTTCAATCAGCAGGcatgttgttg ... tttttgcagaGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCT
EST: CGTTCTCAAACCCTCCACTGTTGTTTCTCCATTCCAGTTCAATCAGCAGA GAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCT
genomic: CGTTCTCAAACCCTCCACTGTTGTTTCTCCATTCCAGTTCAATCAGCAGGcatgttgttg ... tttttgcagaGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCT
gtttcgacatccatgcttattatctcaatctagggtttggaattttttttgcagaGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATCGATTATTCCGATCCCAA
ttttttttgc CT-rich tract
tttggaatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgttgttgtgcttttacagtattacccttgtcttgtttcgacatccatgcttattatctcaatctagggtttggaattttttttgcagaGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATCGATTATTCCGATCCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG