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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tacacaatctcttctctaactttttcttctttccaaatttcttagaagacgctgtaaaggaatacccattgttgctttgttttttagcAGATAAGATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTCCACTGTTGTTTCTCCATTCCAGTTCAATCAGCAGG

Basic information

species Glycine max
transcript GLYMA18G47180.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213606188|gb|DB961332.1|DB961332
EST:     CACTTCGAACGTGTTCTCTTCGACATCTTCACTTAAGCCTTCGATTTGTC                         AGATAAGATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTC
genomic: CACTTCGAACGTGTTCTCTTCGACATCTTCACTTAAGCCTTCGATTTGTGtacacaatct ... gttttttagcAGATAAGATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTC
EST: gi|209710901|gb|BW653662.1|BW653662
EST:     CACTTCGAACGTGTTCTCTTCGACATCTTCACTTAAGCCTTCGATTTGTC                         AGATAAGATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTC
genomic: CACTTCGAACGTGTTCTCTTCGACATCTTCACTTAAGCCTTCGATTTGTGtacacaatct ... gttttttagcAGATAAGATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTC
EST: gi|10235578|gb|BE804466.1|BE804466
EST:     CACTTCGAACGTGTTCTCTTCGACATCTTCACTTAAGCCTTCGATTTGT-                         A--TAAGATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTC
genomic: CACTTCGAACGTGTTCTCTTCGACATCTTCACTTAAGCCTTCGATTTGTGtacacaatct ... gttttttagcAGATAAGATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatttcttagaagacgctgtaaaggaatacccattgttgctttgttttttagcAGATAAGATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTCCACTGTTGTTTCTCCATTCCAGTTCAATCAGCAGG
                                      ttgctttgtttttt  CT-rich tract
                                          tttgtttttta  TA-rich tract