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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggttagtattactctatatatttggttcaattgatattctgtggtgcattatgttcatacttcattatgttttttctttttgaaaggtgtttcttttcttttcattgacaaatttgtttttaccaaactaatattttctcaacaGTCCCAAGGTGGAAGTGCTAAAGAAGCTTCAGAAAATGCCAGAACACCAGGGGCTGACACTACAGTTAAGATATTGTGCTTTCAGAGGTTATTTTATTTG

Basic information

species Glycine max
transcript GLYMA18G46840.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195929|gb|HO044320.1|HO044320
EST:     GCTTGCTGGAGTGACTATAGCACCAGAAAGATTATATGGTCTAGGAACAG                         GTCCCAAGGTGGAAGTGCTAAAGAAGCTTCAGAAAATGCCAGAACA
genomic: GCTTGCTGGAGTGACTATAGCACCAGAAAGATTATATGGTCTAGGAACAGggttagtatt ... tttctcaacaGTCCCAAGGTGGAAGTGCTAAAGAAGCTTCAGAAAATGCCAGAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttttcttttcattgacaaatttgtttttaccaaactaatattttctcaacaGTCCCAAGGTGGAAGTGCTAAAGAAGCTTCAGAAAATGCCAGAACACCAGGGGCTGACACTACAGTTAAGATATTGTGCTTTCAGAGGTTATTTTATTTG
                                    aactaat  putative branch site (score: 2)
                                          tattttctc  CT-rich tract
                    aaatttgtttttacca  TA-rich tract