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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTCggtgggtataaaagcctattgttttctttttatgttatcatttcattttggtgcaaccctttggctttgatttcttagtttaagttttataaaccaagag...

Basic information

species Glycine max
transcript GLYMA18G46840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46840.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0046g02330.t01 (Vitis vinifera), 5'ss of exon 3
GGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTCggtgggtataaaagcctattgttttctttttatgttatcatttcattttggtgcaaccctttggctttgat-ttcttagtttaagtttta-taaaccaagag-----
  |||| || ||||| |||||||| ||||||| |||  | |||||||||||| |||| ||||  ||| | ||||||||||||||||| |||||| ||  | |  | |     | |   ||| | ||||||      || | |||||    | || | |  | || | | ||  |||   | |  |     |      
-ATACGACCGGTGGTAGAAACTGGGTATGAAAATCTACTGCTTGTGAGGTTGCTGCTGGAGATGAGACTGCCATCCATCAGGAAGTCCTCGgtgagtggatatccatgcaactctggcttt-tattatcag-----ttggatgcaaaatatgggttattttgttgtcaattcgagtgacactgtagtggaaatctta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707471|gb|BW664930.1|BW664930
EST:     CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTC                         GGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT
genomic: CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTCggtgggtata ... tcttctgaaaGGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT
EST: gi|213610601|gb|DB960626.1|DB960626
EST:     CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTC                         GGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT
genomic: CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTCggtgggtata ... tcttctgaaaGGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT
EST: gi|298195929|gb|HO044320.1|HO044320
EST:     CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTC                         GGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT
genomic: CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTCggtgggtata ... tcttctgaaaGGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT