1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatcatgtattaacaagtggaagtcatatcatcagattctaaggaactttttcatcatcgatgatgatgccatttgactgatgtcatagttcttctgaaaGGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATTGAAGCCTATCATTATGGAAGAATGGAATGAGAATAGAGAAGAACTAATA
species | Glycine max |
transcript | GLYMA18G46840.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTC GGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATTEST: gi|213610601|gb|DB960626.1|DB960626
genomic: CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTCggtgggtata ... tcttctgaaaGGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT
EST: CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTC GGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATTEST: gi|298195929|gb|HO044320.1|HO044320
genomic: CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTCggtgggtata ... tcttctgaaaGGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT
EST: CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTC GGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT
genomic: CTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTCggtgggtata ... tcttctgaaaGGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATT
actttttcatcatcgatgatgatgccatttgactgatgtcatagttcttctgaaaGGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATTGAAGCCTATCATTATGGAAGAATGGAATGAGAATAGAGAAGAACTAATA
gactgat putative branch site (score: 3)
ttcttct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcatgtattaacaagtggaagtcatatcatcagattctaaggaactttttcatcatcgatgatgatgccatttgactgatgtcatagttcttctgaaaGGTTTCGGAGGGGCTCAAAGTTGAGGATATACTGGAGAACTGGTTCAAATTGAAGCCTATCATTATGGAAGAATGGAATGAGAATAGAGAAGAACTAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -catgtat
- - - - - - -caagtgg
- - - - - - - - - - - - catatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtc