1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taggatactgaagacatagttaaaatgtacaattaaatattaggtttatagtttgattacacatgagaggttagaaatgaactcattttttttcatgtcaGGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTC
species | Glycine max |
transcript | GLYMA18G46840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGGTGTGGATTCAACCATAGAAGATTGGATTGTTGACCAGATGATTAC AGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTTEST: gi|213610601|gb|DB960626.1|DB960626
genomic: GATGGTGTGGATTCAACCATAGAAGATTGGATTGTTGACCAGATGATTACagtaaataat ... tttcatgtcaGGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTT
EST: GATGGTGTGGATTCAACCATAGAAGATTGGATTGTTGACCAGATGATTAC AGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTT
genomic: GATGGTGTGGATTCAACCATAGAAGATTGGATTGTTGACCAGATGATTACagtaaataat ... tttcatgtcaGGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTT
ttatagtttgattacacatgagaggttagaaatgaactcattttttttcatgtcaGGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTC
gtttgat putative branch site (score: 5)
ctcattttttttcat putative PPT
aactcatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggatactgaagacatagttaaaatgtacaattaaatattaggtttatagtttgattacacatgagaggttagaaatgaactcattttttttcatgtcaGGTACGGCCAGTGGTGGAAACTGGATATGAAACTCTTTTACTTGTGAGGTTGTTGCTTGAGACTAGAGTTCCATCCATCAGGAAGTCTTC
- -gatactg
- - - - - - - - - - - -aatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatgaa