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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTGATGCATTCTCACAATCTGGTCTGTATTCCATCACCAAGTCATTGGACCACGCTATGCTgtgagtcattggtttcctaatttacatgtaccatgaccaataaactgtaaaatgtgagcttaaaagtgttcaatactgatactaaagagaatatagtacaatacactttgcttgaatttttcttctttacactcataaatcaatttgtctctatcagaatattcatgagtttcaatgtcag

Basic information

species Glycine max
transcript GLYMA18G46790.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g02390.t01 (Vitis vinifera), 5'ss of exon 9
GGATCTGATGCATTCTCACAATCTGGTCTGTATTCCA-TCACCAAGTCATTGGACCACGCTATGCTgtgagtcattggtttcctaatttacatgtaccatgaccaataaactgtaaaatgtgagcttaaaagtgttcaatactgatactaaagagaatatagtac---aatacactttgct--tgaatttttcttctttacactcataaatcaatttgtctctatcagaatattcatgagtttcaatgtcag
|| || || ||||||||||| ||||| || ||||||| |||||||| |||||| ||||| ||||||||||||   |  | |  |  | |  ||||| ||||| |     | ||| ||   ||  ||| ||      ||||  |  ||||  | |  ||||  |||   ||  |  |||||   |||||| |   |||||   | | |  |||||  |  |  ||| |   | || ||    | ||  |    
GGGTCAGACGCATTCTCACAGTCTGGACTCTATTCCAATCACCAAGACATTGGGCCACGTTATGCTgtgagttgctcctattgttttct-tatgtaacatgaac----cagtgttaa---tgtccttcaagaaa--caattatcttacttgaaattatatgttacttgaaatcggtttgcccctgaattatgtctctttgt-ccctttcatcaaccttaccttatta---ttttgattc-ctccacag----