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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcagagagaagcagatcacttgccctagtatatagTGGCATGCACCTTGGTTCTGTGGTTGGCTTGGCATTCTAACCATTGCTAATTCTCAAAATTTTGGGTGGCCATCAGTTTTTTACTCTTTTGGATCCCTTG

Basic information

species Glycine max
transcript GLYMA18G46790.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46790.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv15s0046g02390.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------gtttcagagagaagcagatcacttgccctagtatatagTGGCATGCACCTTGGTTCTGTGGTTGGCTTGGCATTCTAACCATTGCTAATTCTCAAAATTTTGGGTGGCCATCAGTTTTTTACTCTTTTGGATCCCTTG---------------------------
                                          | | | |  ||  ||||  |     |||  |||  | |   |  || ||   || | |  |  |  ||    | |  |   |   |||  |  |  ||    ||||    ||||||   |        |||| || |                           
gttgttttcgtaacattgaattttgtttcctacttcaactgttcttaaactgatacagagaa----tcctgttattgattaaaagtcatct--attttcttatcagGGTGTTGCTATGCCTGCTATGAATAATATACTTTCAAAGTGGATTCCAGTTTCAGAGAGAAGCAGATCACTAGCACTAGTATATAGTGGAATGTATCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcagagagaagcagatcacttgccctagtatatagTGGCATGCACCTTGGTTCTGTGGTTGGCTTGGCATTCTAACCATTGCTAATTCTCAAAATTTTGGGTGGCCATCAGTTTTTTACTCTTTTGGATCCCTTG
                                                      cttgccct  CT-rich tract
                                             tagtatata  TA-rich tract