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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTGGAAGGCAATTTATCAAATGCACATGTTTCTTCCATTCCTTGGAAATTGATTTTATCAAAGGCACCTGTTTTGGCTCTTATAATCTCCCACTTCTgtcacaattgaaggacatttattcttctaacctggatgcctacttactacaatcaggtattaaccctttttttgataaatatttaatagtatacataaat...

Basic information

species Glycine max
transcript GLYMA18G46790.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46790.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g39680.1 (Oryza sativa), 5'ss of exon 6
ATACTGGAAGGCAATTTATCAAATGCACATGTTTCTTCCATTCCTTGGAAATTGATTTTATCAAAGGCACCTGTTTTGGCTCTTATAATCTCCCACTTCTgtcacaattgaaggacatttattcttctaacctggatgcctacttactacaatcaggtattaacccttt-----ttttgataaatatttaatagtatacataaat-----------------------------------------
                                                        | |||||||| | || || | |||||| ||| | || || || || || |||||  | || || ||||||||||| ||||||||||| |||||||| |||||  | ||  |||              ||||   | | |      | ||                                         
--------------------------------------------------------TCTATCAAAGCCTCCAGTATGGGCTCTAATAGTATCACATTTTTGCCATAATTGGGGAACCTTCATTCTTCTAACATGGATGCCTACATACTACAACCAGgttcttacaatttaatacccactgcccatatcagacaatggtagcatatcctgttcttggtggttgtactcaccaggtgctcttatccag

upper sequence: GLYMA18G46790.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G046681_T01 (Zea mays), 5'ss of exon 6
ATACTGGAAGGCAATTTATCAAATGCACATGTTTCTTCCATTCCTTGGAAATTGATTTTATCAAAGGCACCTGTTTTGGCTCTTATAATCTCCCACTTCTgtcacaattgaaggacatttattcttctaacctggatgcctacttactacaatcaggtattaaccctttttt--tgataaatatttaatagtatacataaat-------------------------------------------------------------
                                                        | |||||||||| || || | |||||| ||||| || || || || || || ||  | ||||| ||||||||||| |||||||| || ||||||||||||||    ||| | || |  ||  |||  ||| |   |   ||| | |                                                             
--------------------------------------------------------TCTATCAAAGGCTCCAGTGTGGGCTCTCATAATATCACATTTTTGCCATAACTGGGGAACATTCATTCTTCTAACATGGATGCCCACATACTACAATCAGgttgctaccatgttatgctgtgaaacgtttgactttccccattatttaaattatataatgatagcatatcatgccattggttgtgctccccaaatccttttatccag

upper sequence: GLYMA18G46790.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0046g02390.t01 (Vitis vinifera), 5'ss of exon 6
ATACTGGAAGGCAATTTATCAAATGCACATGTTTCTTCCATTCCTTGGAAATTGATTTTATCAAAGGCACCTGTTTTGGCTCTTATAATCTCCCACTTCTgtcacaattgaaggacatttattcttctaacctggatgcctacttactacaatcaggtatt-aaccctttttttgataaata----tttaatagtatacataaat---------------------------------------------------
                                                        ||| || |||||||| |||| |||||| ||||||||||| ||||| || || ||  | || |||||||||||||| ||||||||||| ||||| ||||||||||| ||  |||||   ||    |     |||  |   |||   |  |                                                   
--------------------------------------------------------TTTGTCGAAGGCACCAGTTTGGGCTCTCATAATCTCCCATTTCTGCCATAACTGGGGAACTTTTATTCTTCTAACATGGATGCCTACGTACTATAATCAGgtatttaagacttttcgggactggtcctactttggtcaaatattcatttccatatttctttcctggaaagtttatagataccagtattttgtctccaaaa