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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagcttgaacaacatatatttctgagtttgaattttcgctattttttaaccctttttttgtaaagcattagcacctctacaaaatgtttccatatgttctaaatttaaccataatcggttatttttcttgacagGGATCTGATGCATTCTCACAATCTGGTCTGTATTCCATCACCAAGTCATTGGACCACGCTATGCT

Basic information

species Glycine max
transcript GLYMA18G46790.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46790.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0046g02390.t01 (Vitis vinifera), 3'ss of exon 8
gtttgagcttgaacaacatatatttctgagtttgaattttcgctattttttaaccctttttttgtaaagcattagcacctctacaaaatgtttccatatgttctaaatttaaccataatcggttatttttcttgacagGGATCTGATGCATTCTCACAATCTGGTCTGTATTCCA-TCACCAAGTCATTGGACCACGCTATGCT
                       |||  | |  ||   | |   ||||| |   | | |         | |||  ||  |  |||||||| ||  | |       |||| ||| ||      |   | |||||||||||| || || ||||||||||| ||||| || ||||||| |||||||| |||||| ||||| ||||||
-----------------------ttcacaatcaga---tgcaagattttct---cttctcagaaattggaatttacaagtgaacaaaatggttgaaga-------aattaaactatgggtact--ctgttcttgacagGGGTCAGACGCATTCTCACAGTCTGGACTCTATTCCAATCACCAAGACATTGGGCCACGTTATGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaatgtttccatatgttctaaatttaaccataatcggttatttttcttgacagGGATCTGATGCATTCTCACAATCTGGTCTGTATTCCATCACCAAGTCATTGGACCACGCTATGCT
                                       ttatttttctt  CT-rich tract
            atatgttctaaattta  TA-rich tract