Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgctctagctaatcggcttatcctccaagtcattctccacatcatatttactctatattgataaaattttctcattagtatatttcattttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCTGTTGGGTATGGAACAGCTAAAGGTCATGATTATTGGATCGTAAGGAAT

Basic information

species Glycine max
transcript GLYMA17G35720.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964286|gb|BM271023.1|BM271023
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|7691191|gb|AW759323.1|AW759323
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|33389614|gb|CA852821.1|CA852821
EST:     CAGGGNAATTTCAATTATATGTATNC                         TGGTGTATTCACGGGGNAGNATGTGGCACAGCACTAGATCATGGTGTCGT
genomic: CAGGG-AATTTCAATTATATGTAT-Ctgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGG-AG-ATGTGGCACAGCACTAGATCATGGTGTCGT
EST: gi|254334234|gb|GR849152.1|GR849152
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|6134132|gb|AW132525.1|AW132525
EST:     TGAGCGTTGCTATTGGAAG-AGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: TGAGCGTTGCTATTG-AAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|254335596|gb|GR847124.1|GR847124
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|17519647|gb|BM188689.1|BM188689
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|27427369|gb|CA938889.1|CA938889
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|13311593|gb|BG405244.1|BG405244
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|120494577|gb|EH222744.1|EH222744
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|7796732|gb|AW782126.1|AW782126
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATNTCAATTATATGTATC                         TGGTGTATTCACGGCGAGATGTGGCACAGCACTAGATCATGGTGTCGTTGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|15000556|gb|BI321370.1|BI321370
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|7639445|gb|AW733768.1|AW733768
EST:     AGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: AGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|254324088|gb|GR840513.1|GR840513
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGG
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGG-AGATGTGGCACAGCACTAGATCATGGTGTCGTGG
EST: gi|254333593|gb|GR848511.1|GR848511
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|7587926|gb|AW703732.1|AW703732
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|17519808|gb|BM188850.1|BM188850
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|151399187|gb|EV269058.1|EV269058
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|19934759|gb|BQ079789.1|BQ079789
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|7639933|gb|AW734244.1|AW734244
EST:     AGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: AGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|120491796|gb|EH219963.1|EH219963
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|5753271|gb|AI960558.1|AI960558
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|17153062|gb|BM142995.1|BM142995
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|20449653|gb|BQ253777.1|BQ253777
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|298185537|gb|HO030750.1|HO030750
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         CGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|9986653|gb|BE660761.1|BE660761
EST:     TGAGCCGTTGCTATTGAAGGAGGGGGCANGGAATTTCAATTATATGTATC                         TGGTGTATTCACCGGGGAGATGTGGCACAGCACTANATCATGGTGTCCTGG
genomic: TGAGC-GTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCAC-GGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGG
EST: gi|15201513|gb|BI424911.1|BI424911
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|19348120|gb|BM892652.1|BM892652
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|16995696|gb|BM085068.1|BM085068
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|21995205|gb|BQ786733.1|BQ786733
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|16996010|gb|BM085382.1|BM085382
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|9819742|gb|BE555255.1|BE555255
EST:     ATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: ATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|19452660|gb|BM954070.1|BM954070
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|254338511|gb|GR849929.1|GR849929
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|10845827|gb|BF068869.1|BF068869
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCANGGAATTTCAATTATATGTATC                         TGGTGTATACACGGGGAGATGTGGCACCGCACTAGATCATGGTGTCGTGGA
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|15815733|gb|BI788008.1|BI788008
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
EST: gi|19934762|gb|BQ079792.1|BQ079792
EST:     GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATC                         TGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC
genomic: GTGAGCGTTGCTATTGAAGGAGGGGGCAGGGAATTTCAATTATATGTATCtgtaagtttc ... ttttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatttactctatattgataaaattttctcattagtatatttcattttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCTGTTGGGTATGGAACAGCTAAAGGTCATGATTATTGGATCGTAAGGAAT
             tattgat  putative branch site (score: 3)
                                        tttcattttttgtc  putative PPT
           tatattgataaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttgctctagctaatcggcttatcctccaagtcattctccacatcatatttactctatattgataaaattttctcattagtatatttcattttttgtcaGGGTGTATTCACGGGGAGATGTGGCACAGCACTAGATCATGGTGTCGTGGCTGTTGGGTATGGAACAGCTAAAGGTCATGATTATTGGATCGTAAGGAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - -tcctcca
- - - - - - - - - - - - - - - -gtcattc
- - - - - - - - - - - - - - - - - - - -ccacatc