Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgagtttctggcagtgatctgaatctttttataacctatagttttttttaacaaactttgcttatcttgagatttgtttaatgttttttttcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAGATAGTAACAGGCGAACTGATTTCGTTATCAGAACAAGAATTGGTGGATT

Basic information

species Glycine max
transcript GLYMA17G35720.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724202|gb|BW658108.1|BW658108
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209713727|gb|BW679404.1|BW679404
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCG
EST: gi|17964286|gb|BM271023.1|BM271023
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|193722015|gb|FK659479.1|FK659479
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAG
EST: gi|213599364|gb|DB970340.1|DB970340
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCNAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGC
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGC
EST: gi|193381416|gb|FK347469.1|FK347469
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCGATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|254328813|gb|GR833185.1|GR833185
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209723388|gb|BW679936.1|BW679936
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGGATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209702475|gb|BW667107.1|BW667107
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|16105731|gb|BI893471.1|BI893471
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209728995|gb|BW655025.1|BW655025
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|9986656|gb|BE660764.1|BE660764
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209705357|gb|BW668001.1|BW668001
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCAT
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCAT
EST: gi|254337069|gb|GR844959.1|GR844959
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209696923|gb|BW660488.1|BW660488
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209705144|gb|BW653353.1|BW653353
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|120494577|gb|EH222744.1|EH222744
EST:     AGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: AGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|7796732|gb|AW782126.1|AW782126
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|27427104|gb|CA938624.1|CA938624
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|213600903|gb|DB958439.1|DB958439
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGAACAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCA
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCA
EST: gi|10235249|gb|BE804086.1|BE804086
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|213590271|gb|DB970097.1|DB970097
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|254324088|gb|GR840513.1|GR840513
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|254333593|gb|GR848511.1|GR848511
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209697183|gb|BW672948.1|BW672948
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAA
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAA
EST: gi|209728384|gb|BW652041.1|BW652041
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|213600352|gb|DB955892.1|DB955892
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|213618516|gb|DB967725.1|DB967725
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCAT
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCAT
EST: gi|213602645|gb|DB968899.1|DB968899
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|11274192|gb|BF324560.1|BF324560
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|208142447|gb|GD933989.1|GD933989
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|23733434|gb|BU764916.1|BU764916
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|17153062|gb|BM142995.1|BM142995
EST:     GGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: GGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209703664|gb|BW678345.1|BW678345
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCNAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCG
EST: gi|15664201|gb|BI701572.1|BI701572
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAAT
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAAT
EST: gi|9986653|gb|BE660761.1|BE660761
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|254338298|gb|GR849823.1|GR849823
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAAGGAATAAATAA
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAA-GGAATAAATAA
EST: gi|213589578|gb|DB973221.1|DB973221
EST:     ATTGNAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209699737|gb|BW655776.1|BW655776
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|213601370|gb|DB968700.1|DB968700
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|24206155|gb|BU965408.1|BU965408
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|213587159|gb|DB965905.1|DB965905
EST:     TTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGGAG-CTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCG
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGG-AGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCG
EST: gi|209714976|gb|BW650822.1|BW650822
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|16996010|gb|BM085382.1|BM085382
EST:     AGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: AGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|120494943|gb|EH223110.1|EH223110
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|10845827|gb|BF068869.1|BF068869
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|120493274|gb|EH221441.1|EH221441
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|4307885|gb|AI444111.1|AI444111
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209716955|gb|BW679629.1|BW679629
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|9986652|gb|BE660760.1|BE660760
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|15815733|gb|BI788008.1|BI788008
EST:     GTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
genomic: GTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAG
EST: gi|209703401|gb|BW676228.1|BW676228
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGT
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGT
EST: gi|193562465|gb|FK518254.1|FK518254
EST:     ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGT                         GGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAG
genomic: ATTGGAGGAAGGAAGGTGCTGTTCCTCCTGTCAAAGACCAAGGAGGCTGTggtaagcaca ... tcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaacaaactttgcttatcttgagatttgtttaatgttttttttcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAGATAGTAACAGGCGAACTGATTTCGTTATCAGAACAAGAATTGGTGGATT
                                      ttttttttcttaattt  CT-rich tract
                     ttgagatttgtttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgagtttctggcagtgatctgaatctttttataacctatagttttttttaacaaactttgcttatcttgagatttgtttaatgttttttttcttaatttaGGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTAGAAGGAATAAATAAGATAGTAACAGGCGAACTGATTTCGTTATCAGAACAAGAATTGGTGGATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- -gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttat