1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTATGGACTATGCATTTGAGTTCATAATCAACAATGGCGGCATTGATTCTGATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcacttggtcctgattatttgatgattatagtagttatcactcaagttcttatattgattattttttgttcggttattttgctattgtgca
species | Glycine max |
transcript | GLYMA17G35720.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|7691191|gb|AW759323.1|AW759323
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|254334234|gb|GR849152.1|GR849152
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|254328813|gb|GR833185.1|GR833185
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|6134132|gb|AW132525.1|AW132525
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|209728995|gb|BW655025.1|BW655025
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|27427369|gb|CA938889.1|CA938889
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|209705144|gb|BW653353.1|BW653353
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|13311593|gb|BG405244.1|BG405244
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|120494577|gb|EH222744.1|EH222744
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|7796732|gb|AW782126.1|AW782126
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|15000556|gb|BI321370.1|BI321370
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: ATGAGGATTTCTCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|27427104|gb|CA938624.1|CA938624
genomic: ATGAGGATTAC-CCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAEST: gi|10235249|gb|BE804086.1|BE804086
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|254324088|gb|GR840513.1|GR840513
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|254333593|gb|GR848511.1|GR848511
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|17519808|gb|BM188850.1|BM188850
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|151399187|gb|EV269058.1|EV269058
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|19934759|gb|BQ079789.1|BQ079789
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|11274192|gb|BF324560.1|BF324560
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: ATGAGGATTACCCATACCGTGGTGTAGATGGTAGATGCGACACATATATG GAAAA-TGCTAAAGGTCGTT-CTATTGATGACTACCAAGATGTTGCTGTCEST: gi|17153062|gb|BM142995.1|BM142995
genomic: ATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATA-Gggtcagtcac ... ctattgtgcaGAAAAATGCTAAAG-TCGTTTCTATTGATGACTACGAAGATGTTCCTGCC
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|20449653|gb|BQ253777.1|BQ253777
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|298185537|gb|HO030750.1|HO030750
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACGCATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|9986653|gb|BE660761.1|BE660761
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACCAAGATGTTCCTGCCTAEST: gi|15201513|gb|BI424911.1|BI424911
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|19348120|gb|BM892652.1|BM892652
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|16995696|gb|BM085068.1|BM085068
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|16996010|gb|BM085382.1|BM085382
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|19452660|gb|BM954070.1|BM954070
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: TGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|120494943|gb|EH223110.1|EH223110
genomic: TGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGEST: gi|10845827|gb|BF068869.1|BF068869
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCG
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|15815733|gb|BI788008.1|BI788008
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTAEST: gi|19934762|gb|BQ079792.1|BQ079792
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
EST: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAG GAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
genomic: GATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcac ... ctattgtgcaGAAAAATGCTAAAGTCGTTTCTATTGATGACTACGAAGATGTTCCTGCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGGACTATGCATTTGAGTTCATAATCAACAATGGCGGCATTGATTCTGATGAGGATTACCCATACCGTGGTGTTGATGGTAGATGCGACACATATAGggtcagtcacttggtcctgattatttgatgattatagtagttatcactcaagttcttatattgattattttttgttcggttattttgctattgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT