1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagaggggaaaggacgtggattcgatcccttctactaacaaaaactaacatttgccgattaaaaaaactattaattaaagggttcttcttcttcttcagaTTGCTGAAGATCTCAATTTTGTGGTTAGCATTCAAAGGAAGTTCAGCTACCTCCACAGCATACCAGGTGTATTTTCCATTCAAAGACCACACCTACCCAT
species | Glycine max |
transcript | GLYMA17G35710.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGA TTGCTGAAGATCTCAATTTTGTGGTTAGCATTCAAAGGAAGTTCAGCTACCEST: gi|18734745|gb|BM528362.1|BM528362
genomic: TGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGGtcttggtctc ... cttcttcagaTTGCTGAAGATCTCAATTTTGTGGTTAGCATTCAAAGGAAGTTCAGCTACC
EST: TGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGA TTGCTGAAGATCTCAATTTTGTGGTTAGCATTCAAAGGAAGTTCAGCTACCEST: gi|27427471|gb|CA938991.1|CA938991
genomic: TGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGGtcttggtctc ... cttcttcagaTTGCTGAAGATCTCAATTTTGTGGTTAGCATTCAAAGGAAGTTCAGCTACC
EST: TGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGA TTGCTGAAGATCTCAATTTTGTGGTTAGCATTCAAAGGAAGTTCAGCTACC
genomic: TGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGGtcttggtctc ... cttcttcagaTTGCTGAAGATCTCAATTTTGTGGTTAGCATTCAAAGGAAGTTCAGCTACC
taacatttgccgattaaaaaaactattaattaaagggttcttcttcttcttcagaTTGCTGAAGATCTCAATTTTGTGGTTAGCATTCAAAGGAAGTTCAGCTACCTCCACAGCATACCAGGTGTATTTTCCATTCAAAGACCACACCTACCCAT
ttcttcttcttcttc CT-rich tract
attaaaaaaactatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaggggaaaggacgtggattcgatcccttctactaacaaaaactaacatttgccgattaaaaaaactattaattaaagggttcttcttcttcttcagaTTGCTGAAGATCTCAATTTTGTGGTTAGCATTCAAAGGAAGTTCAGCTACCTCCACAGCATACCAGGTGTATTTTCCATTCAAAGACCACACCTACCCAT
-agagggg
- - - - - - - - - - - - -tcccttc
- - - - - - - - - - - - - - - - -actaaca
- - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa