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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ttagtaaattcattcagaaggggttcagaaacccgtgttaatggcagagtttacatcaatttttttttatcaaatttgatctaattgatgttatcaaattgtcattcattttgatagaCCATTGCTGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGG

Basic information

species Glycine max
transcript GLYMA17G35710.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812787|gb|BQ297265.1|BQ297265
EST:     AACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGA                         CCATTGCTGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTA
genomic: AACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGGttagtaaatt ... ttttgatagaCCATTGCTGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTA
EST: gi|18734745|gb|BM528362.1|BM528362
EST:     AACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGA                         CCATTGCTGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTA
genomic: AACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGGttagtaaatt ... ttttgatagaCCATTGCTGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTA
EST: gi|27427471|gb|CA938991.1|CA938991
EST:     AACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGA                         CCATTGCTGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTA
genomic: AACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGGttagtaaatt ... ttttgatagaCCATTGCTGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatcaaatttgatctaattgatgttatcaaattgtcattcattttgatagaCCATTGCTGTCATTGCTGTCAGAGAAGGCTTAGTACAACTTGGTTCATTTAACAAGG
                                         ttcatttt  CT-rich tract
        aaatttgatctaatt  TA-rich tract