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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taagggaagtagctaacaataagtgcaaaaaaaaaaacacttggtttatatttttagttttataacttgacatttaatcttgacagcAACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGG

Basic information

species Glycine max
transcript GLYMA17G35710.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481635|gb|BG510978.1|BG510978
EST:     TGGGTGTGAATCTAGCTACATTGGTGCATGGAATGCTTCAATGGATCATC                         AACCAAAGACATGGGAGTTTCAG
genomic: TGGGTGTGAATCTAGCTACATTGGTGCATGGAATGCTTCAATGGATCATGtaagggaagt ... tcttgacagcAACCAAAGACATGGGAGTTTCAG
EST: gi|20812787|gb|BQ297265.1|BQ297265
EST:     TGGGTGTGAATCTAGCTACATTGGTGCATGGAATGCTTCAATGGATCATC                         AACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGA
genomic: TGGGTGTGAATCTAGCTACATTGGTGCATGGAATGCTTCAATGGATCATGtaagggaagt ... tcttgacagcAACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGG
EST: gi|18734745|gb|BM528362.1|BM528362
EST:     TGGGTGTGAATCTAGCTACATTGGTGCATGGAATGCTTCAATGGATCATC                         AACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGA
genomic: TGGGTGTGAATCTAGCTACATTGGTGCATGGAATGCTTCAATGGATCATGtaagggaagt ... tcttgacagcAACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGG
EST: gi|27427471|gb|CA938991.1|CA938991
EST:     CTACATTGGTGCATGGAATGCTTCAATGGATCATC                         AACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGA
genomic: CTACATTGGTGCATGGAATGCTTCAATGGATCATGtaagggaagt ... tcttgacagcAACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaacacttggtttatatttttagttttataacttgacatttaatcttgacagcAACCAAAGACATGGGAGTTTCAGTTAAATTCAGGTATTCAGG
            tttatatttttagttt  TA-rich tract