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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaattacagatcttttgtgaaactggattaattactcagcaataacgttaactaatgtgccacgtttgtttgatgatgatgatgatgcag

Basic information

species Glycine max
transcript GLYMA17G35650.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591517|gb|AW707248.1|AW707248
EST:     CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
genomic: CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
EST: gi|17400854|gb|BM177636.1|BM177636
EST:     CTGACAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
genomic: CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
EST: gi|17153046|gb|BM142979.1|BM142979
EST:     CTGACAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
genomic: CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
EST: gi|298196285|gb|HO044676.1|HO044676
EST:     CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
genomic: CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
EST: gi|208336749|gb|GE135139.1|GE135139
EST:     CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
genomic: CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
EST: gi|6566981|gb|AW234608.1|AW234608
EST:     CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
genomic: CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
EST: gi|7924359|gb|AW830385.1|AW830385
EST:     GGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
genomic: GGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
EST: gi|7925356|gb|AW831443.1|AW831443
EST:     CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
genomic: CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
EST: gi|16105208|gb|BI892948.1|BI892948
EST:     CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATC
genomic: CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATC
EST: gi|13479239|gb|BG508582.1|BG508582
EST:     CTGACAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG                         TTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG
genomic: CTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaatt ... gatgatgcagTTTGATTACCGAATCCCAACATCGGGGTACGAGACGTGCGGATCCAATGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTGgtacgtaattacagatcttttgtgaaactggattaattactcagcaataacgttaactaatgtgccacgtttgtttgatgatgatgatgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA