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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCGTTAAGAACCCGATCTCGCTCGCTCGTTTGGTTATGGACAAATCCCCACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaattgtgattctaattccaacctggttttttactttcttctaaatggcgtaaaccaaaacaaactttgattttgcctttcttctcattcgccaa...

Basic information

species Glycine max
transcript GLYMA17G35650.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591517|gb|AW707248.1|AW707248
EST:     ATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
genomic: ATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: gi|17153046|gb|BM142979.1|BM142979
EST:     CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGACAATGTTGGC
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: gi|298196285|gb|HO044676.1|HO044676
EST:     CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: gi|208336749|gb|GE135139.1|GE135139
EST:     CCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
genomic: CCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: gi|6566981|gb|AW234608.1|AW234608
EST:     GAAGAATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
genomic: GAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: gi|7925356|gb|AW831443.1|AW831443
EST:     CGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
genomic: CGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: gi|9986744|gb|BE660852.1|BE660852
EST:     CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGTACTT
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTT
EST: gi|105633504|gb|DW246867.1|DW246867
EST:     CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGT
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGT
EST: gi|16105208|gb|BI892948.1|BI892948
EST:     CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: gi|13479239|gb|BG508582.1|BG508582
EST:     CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG                         GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGACAATGTTGGC
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACCGTTAAGAACCCGATCTCGCTCGCTCGTTTGGTTATGGACAAATCCCCACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaattgtgattctaattccaacctggttttttactttcttctaaatggcgtaaaccaaaacaaactttgattttgcctttcttctcattcgccaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaaa