1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtaatggcattattcgtgaacgtgtgcaaatctatgaatttaatagtagcattttaatccctagcaagtagtaaattatagcggttggattgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG
species | Glycine max |
transcript | GLYMA17G35650.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCEST: gi|17153046|gb|BM142979.1|BM142979
genomic: ATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGACAATGTTGGCEST: gi|298196285|gb|HO044676.1|HO044676
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCEST: gi|208336749|gb|GE135139.1|GE135139
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: CCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCEST: gi|6566981|gb|AW234608.1|AW234608
genomic: CCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: GAAGAATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCEST: gi|7925356|gb|AW831443.1|AW831443
genomic: GAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: CGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCEST: gi|9986744|gb|BE660852.1|BE660852
genomic: CGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTACTTEST: gi|105633504|gb|DW246867.1|DW246867
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTT
EST: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTEST: gi|16105208|gb|BI892948.1|BI892948
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGT
EST: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCEST: gi|13479239|gb|BG508582.1|BG508582
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
EST: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAG GGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGACAATGTTGGC
genomic: CACATTCCTATCTCGCCTTCTCCGGAGCCGAAGAATTTGCTAGGCAACAGgtttacaatt ... tgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGC
gtagcattttaatccctagcaagtagtaaattatagcggttggattgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG
ttttaat putative branch site (score: 3)
ttgttttcc putative PPT
aagtagtaaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggcattattcgtgaacgtgtgcaaatctatgaatttaatagtagcattttaatccctagcaagtagtaaattatagcggttggattgttttccagGGTGTGGAGGTTGTGGACAACGAGTACTTTATCACACCTGATAATGTTGGCATGCTCAAGCTGGCCAAGGAAGCAAACACAATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - -ggcatta
- - - - - - - cgtgaac
- - - - - - - - - - -gtgtgca
- - - - - - - - - - - - - - - -ctatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcggttg