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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagtacaaccataatgtttgtctactaacacaacttaatgccaccaaagcatctatccattggaaacaccactcatcatccatatctaatctaaaacctgatgctgatagaagttatcattctgcttatggaatcaatattttgtgatggtgta

Basic information

species Glycine max
transcript GLYMA17G35290.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317453|gb|FK011271.1|FK011271
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACCGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|7233691|gb|AW569035.1|AW569035
EST:     GCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: GCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|6726333|gb|AW310687.1|AW310687
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|27426761|gb|CA938281.1|CA938281
EST:     CAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: CAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|22930611|gb|BU547758.1|BU547758
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|192317454|gb|FK011272.1|FK011272
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACCGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|192313493|gb|FK005545.1|FK005545
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|192324777|gb|FK018783.1|FK018783
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|6719641|gb|AW307288.1|AW307288
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|31463119|gb|CD405147.1|CD405147
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|151409626|gb|EV279434.1|EV279434
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|192293922|gb|FG986131.1|FG986131
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: gi|192313492|gb|FK005544.1|FK005544
EST:     ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA                         GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA