1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atataggaacctcttttcccttttggtgtatcaaggcttgttggcacagtgcaattgtcataaaatgaagtttgctgataaattaatgtatctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTTGACCAACTGTTCAAAAGAACAGGGAGCCTTGACAAAAGCTTTGAA
species | Glycine max |
transcript | GLYMA17G35290.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAA GCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTEST: gi|21678062|gb|BQ630413.1|BQ630413
genomic: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAggtcactctc ... tctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTT
EST: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAA GCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTEST: gi|192313493|gb|FK005545.1|FK005545
genomic: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAggtcactctc ... tctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTT
EST: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAA GCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTEST: gi|6719641|gb|AW307288.1|AW307288
genomic: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAggtcactctc ... tctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTT
EST: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAA GCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTEST: gi|151409626|gb|EV279434.1|EV279434
genomic: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAggtcactctc ... tctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTT
EST: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAA GCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTEST: gi|192293922|gb|FG986131.1|FG986131
genomic: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAggtcactctc ... tctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTT
EST: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAA GCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTEST: gi|192313492|gb|FK005544.1|FK005544
genomic: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAggtcactctc ... tctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTT
EST: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAA GCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTT
genomic: GTTTTCCACAAAGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAggtcactctc ... tctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTT
acagtgcaattgtcataaaatgaagtttgctgataaattaatgtatctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTTGACCAACTGTTCAAAAGAACAGGGAGCCTTGACAAAAGCTTTGAA
aattaat putative branch site (score: 3)
tctatct putative PPT
ataaattaatgtatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataggaacctcttttcccttttggtgtatcaaggcttgttggcacagtgcaattgtcataaaatgaagtttgctgataaattaatgtatctatctgcaGCTGAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGTAAGCCACACTTTGACCAACTGTTCAAAAGAACAGGGAGCCTTGACAAAAGCTTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - - - tgttggc
- - - - - - - - - - - - - - - - - - - - - - - cagtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat