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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtaataaatttctaggtacttgcaatgcataacagaacattcagttcttcagcatttatctaattttttagatgttttaattaGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA

Basic information

species Glycine max
transcript GLYMA17G35290.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317453|gb|FK011271.1|FK011271
EST:     GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGA                         GAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
genomic: GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAggtaataaat ... gttttaattaGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
EST: gi|21678062|gb|BQ630413.1|BQ630413
EST:     GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGA                         GAAACCTGCAGCAGC
genomic: GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAggtaataaat ... gttttaattaGAAACCTGCAGCAGC
EST: gi|22930611|gb|BU547758.1|BU547758
EST:     GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGA                         GAAACCTGCAGCAGCCAAAGTCTCAAGTATGTNNNGAGGAACAAGGGACAA
genomic: GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAggtaataaat ... gttttaattaGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
EST: gi|192313493|gb|FK005545.1|FK005545
EST:     GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGA                         GAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
genomic: GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAggtaataaat ... gttttaattaGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
EST: gi|6719641|gb|AW307288.1|AW307288
EST:     GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGA                         GAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
genomic: GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAggtaataaat ... gttttaattaGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
EST: gi|151409626|gb|EV279434.1|EV279434
EST:     GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGA                         GAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
genomic: GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAggtaataaat ... gttttaattaGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
EST: gi|192293922|gb|FG986131.1|FG986131
EST:     GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGA                         GAGACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
genomic: GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAggtaataaat ... gttttaattaGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
EST: gi|192313492|gb|FK005544.1|FK005544
EST:     GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGA                         GAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA
genomic: GGAACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAAGAggtaataaat ... gttttaattaGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacagaacattcagttcttcagcatttatctaattttttagatgttttaattaGAAACCTGCAGCAGCCAAAGTCTCAAGTATGTTTGGAGGAACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA
                             atctaat  putative branch site (score: 3)
                         atttatctaatttttt  TA-rich tract