1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ggtaaatagtacaaccataatgtttgtctactaacacaacttaatgccaccaaagcatctatccattggaaacaccactcatcatccatatctaatctaaaacctgatgctgatagaagttatcattctgcttatggaatcaatattttgtgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAA
species | Glycine max |
transcript | GLYMA17G35290.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACCGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|7233691|gb|AW569035.1|AW569035
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: GCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|6726333|gb|AW310687.1|AW310687
genomic: GCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|27426761|gb|CA938281.1|CA938281
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: CAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|22930611|gb|BU547758.1|BU547758
genomic: CAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|192317454|gb|FK011272.1|FK011272
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACCGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|192313493|gb|FK005545.1|FK005545
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|192324777|gb|FK018783.1|FK018783
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|6719641|gb|AW307288.1|AW307288
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|31463119|gb|CD405147.1|CD405147
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|151409626|gb|EV279434.1|EV279434
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|192293922|gb|FG986131.1|FG986131
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCAEST: gi|192313492|gb|FK005544.1|FK005544
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
EST: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAA GGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
genomic: ACAAGGGACAAATGTGCTGGTTGTCAGAAAACGGTTTATCCCACTGAGAAggtaaatagt ... tgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCA
gatgctgatagaagttatcattctgcttatggaatcaatattttgtgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAA
tgctgat putative branch site (score: 3)
aatcaatattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaaatagtacaaccataatgtttgtctactaacacaacttaatgccaccaaagcatctatccattggaaacaccactcatcatccatatctaatctaaaacctgatgctgatagaagttatcattctgcttatggaatcaatattttgtgatggtgtaGGTGACTGTGAATGGAACCCCTTACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG