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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaggctttgatttcggttttgtgttgctcttttcatctttggagattacaaatattttaataacaatactcgtcaatccattcagATTCACATTGAAGAAACAAGGGGAACTCTTCAGTTTGCTAGCAGAGCCAAGCGCATCACAAATTGTGTTCAAGTGAATGAG

Basic information

species Glycine max
transcript GLYMA17G35140.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35140.1 (Glycine max), 3'ss of exon 9
lower sequence: AT1G59540.2 (Arabidopsis thaliana), 3'ss of exon 9
-----------------gtag--aggctttga----tttcggttttgtgttgctcttttcatctttggagattacaaatattttaataacaatac-tcgtcaatccattcagATTCACATTGAAGAAACAAGGGGAACTCTTCAGTTTGCTAGCAGAGCCAAGCGCATCACAAATTGTGTTCAAGTGAATGAG
                 || |  ||  ||||     | | || |||  ||     |||  |      ||    |    |   |||  ||   ||| | |   ||   |  ||  ||| ||||| ||| |||  |||||||| || ||||| |||||||| ||||||||||| || |||| |||||||||||||
gtaaaataagttgctttgtggttagcttttgtattttcttggctttaagtaatcatttgaagggcaagattagattgtttacttaccaaaggtacattgatgatgtgtgtagCATCATATTGAGGAATCAAAAGGAACTCTCCAATTTGCAAGCAGAGCAAAGCGCATCACCAACTGTGCTCAAGTGAATGAG

upper sequence: GLYMA17G35140.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv18s0001g08700.t01 (Vitis vinifera), 3'ss of exon 9
gtagaggctttgatttcggttttgtgttgctcttttcatctttggagatta---caaatattttaa--taacaatactcgtcaatccat--tcagATTCACATTGAAGAAACAAGGGGAACTCTTCAGTTTGCTAGCAGAGCCAAGCGCATCACAAATTGTGTTCAAGTGAATGAG
    || |||| | ||   || |    |    |||||  |||   ||||||   | || |||||    ||   ||| |     ||  ||  | || |||||||||| ||||| | |||||| || |||||||||||||||||||||||||| || ||||||| |||||||||||||
--gtagtctttcaattttattcttctctttatttttctgcttcttagattagttccaacattttggcttatttatagtacatgatttatatttagGTTCACATTGAGGAAACCAAGGGAACCCTCCAGTTTGCTAGCAGAGCCAAGCGCATTACCAATTGTGCTCAAGTGAATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatctttggagattacaaatattttaataacaatactcgtcaatccattcagATTCACATTGAAGAAACAAGGGGAACTCTTCAGTTTGCTAGCAGAGCCAAGCGCATCACAAATTGTGTTCAAGTGAATGAG
                           taataac  putative branch site (score: 1)
                                              tccattc  putative PPT
            agattacaaatatttt  TA-rich tract