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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTGAAAGCAAAGCAAAGGATTCCAATTCTTCCAATGATTGTTCAATTAATGATGTTGTTAGAGTTTCAGTCTTGgtttgtatccttttctcacaccttccttatatattaaaaaattctttgaggtaatttgcatgcttattgatgagttttgtggaattag

Basic information

species Glycine max
transcript GLYMA17G35140.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35140.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g08700.t01 (Vitis vinifera), 5'ss of exon 7
GTGATTGAAAGCAAAGCAAAGGATTCCAATTCTTCCAATGATTGTTCAATTAATGATGTTGTTAGAGTTTCAGTCTTGgtttgtatccttttctcacaccttccttatatattaaaaaattctttgaggtaatttgcatgcttattgatgagttttgtggaattag-----------------------------------------------------------------------------------------------
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GTTATTGAAAGCAAGGAAAAGGATTCCAATTATTCCAGTGATTATTCAAGTACAGATGCAGTCCGTGTCTCGGTTTTGgtttgttcctgttccttagtgctacttca-aaggagcattagcatttgaattgttttatttatttatttttttgtcaattctaattcattatttcatgttttagttggtatcaattcatttaatatttgattcttcttacttttgtctctgggtcatctcttttattttctatctggaaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193477803|gb|FK442308.1|FK442308
EST:     ATTCTTCCAATGATTGTTCAATTAATGATGTTGTTAGAGTTTCAGTCTTG                         AATTTAGTAGATCTAGCTGGTTCTGAAAGGATTGCTAAGACTGGAGCTGAT
genomic: ATTCTTCCAATGATTGTTCAATTAATGATGTTGTTAGAGTTTCAGTCTTGgtttgtatcc ... gtggaattagAATTTAGTAGATCTAGCTGGTTCTGAAAGGATTGCTAAGACTGGAGCTGAT