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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcccctaaactttttaatttgtgatatatatgtttctcagaatacctttactcataaaattactccttaatcatatgctataatcaaatatatgcagGTGATTGAAAGCAAAGCAAAGGATTCCAATTCTTCCAATGATTGTTCAATTAATGATGTTGTTAGAGTTTCAGTCTTG

Basic information

species Glycine max
transcript GLYMA17G35140.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35140.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0001g08700.t01 (Vitis vinifera), 3'ss of exon 6
gtatcccctaaactttttaatttgtgatatatatgtttctcagaatacctttactcataaaattactccttaatcatatgctataatcaaatatatgcagGTGATTGAAAGCAAAGCAAAGGATTCCAATTCTTCCAATGATTGTTCAATTAATGATGTTGTTAGAGTTTCAGTCTTG
||||   || | | |||| |   | |||  |  | || |||| ||| |||| |      ||||  ||  ||| |   ||  | |  |   ||| |  ||||| ||||||||||| | |||||||||||||| ||||| ||||| ||||| ||  ||||  ||  | || || || |||
gtatgttcttatcattttcaaaag-gatgca-gttttgctcacaattccttca------aaatatcttattattatgattttctctttgcatacaaccagGTTATTGAAAGCAAGGAAAAGGATTCCAATTATTCCAGTGATTATTCAAGTACAGATGCAGTCCGTGTCTCGGTTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193477803|gb|FK442308.1|FK442308
EST:     AGACAAATATGAATGTAAGGAGTAGCAGATCGCACACAATATTCAGAATG                         GTGATTGAGAGCAAAGCAAAGGATTCCAATTCTTCCAATGATTGTTCAATT
genomic: AGACAAATATGAATGTAAGGAGTAGCAGATCGCACACAATATTTAGAATGgtatccccta ... atatatgcagGTGATTGAAAGCAAAGCAAAGGATTCCAATTCTTCCAATGATTGTTCAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacctttactcataaaattactccttaatcatatgctataatcaaatatatgcagGTGATTGAAAGCAAAGCAAAGGATTCCAATTCTTCCAATGATTGTTCAATTAATGATGTTGTTAGAGTTTCAGTCTTG
                      ccttaat  putative branch site (score: 4)
                        ttaatcatatgctata  TA-rich tract