Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCACATTGAAGAAACAAGGGGAACTCTTCAGTTTGCTAGCAGAGCCAAGCGCATCACAAATTGTGTTCAAGTGAATGAGgtccgtgtatttttgtgcacttcaagtttactatcctgttaccctatttaattttattttctggccctaaatgttaatattgcttgataaatgtgaactt...

Basic information

species Glycine max
transcript GLYMA17G35140.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35140.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G59540.1 (Arabidopsis thaliana), 5'ss of exon 10
ATTCACATTGAAGAAACAAGGGGAACTCTTCAGTTTGCTAGCAGAGCCAAGCGCATCACAAATTGTGTTCAAGTGAATGAGgtccgtgtatttttgt-gcacttcaa-----gtttactatcctgttaccctatttaattttattttctggccctaa------atgttaatattgcttgataaatgtgaactt---------------------------------------------------------------------------
  ||| ||||| ||| |||  |||||||| || ||||| |||||||| ||||||||||| || |||| |||||||||||||||| |  | | |||   |||  | ||     ||| | |||   |  |   |  ||| | |  ||||  |    ||       | |||| |  | |    || |   || |                                                                             
CATCATATTGAGGAATCAAAAGGAACTCTCCAATTTGCAAGCAGAGCAAAGCGCATCACCAACTGTGCTCAAGTGAATGAGgtctgcatttatttaaagcatctaaacttctgttgattatttggagatatttgttactctcgtttttagatgttactgcgctacgttatttcttcccattacaaaggatcaccgcctacatgtgtccaattgactgttttttttcctctttatcggaatataatctgaccatgtttaaatgctgcag

upper sequence: GLYMA17G35140.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0001g08700.t01 (Vitis vinifera), 5'ss of exon 10
ATTCACATTGAAGAAACAAGGGGAACTCTTCAGTTTGCTAGCAGAGCCAAGCGCATCACAAATTGTGTTCAAGTGAATGAGgtccgtgtatt--tttgtgcacttcaagttt-actatcctgttaccctatttaattttattttctggccctaaatgttaatattgcttgataaatgtgaactt
 |||||||||| ||||| | |||||| || |||||||||||||||||||||||||| || ||||||| |||||||||||||||| ||  |||  | | |||| ||  | ||| ||| |   || |   | ||||   || | || || |  | ||    |    |     || |    ||    
GTTCACATTGAGGAAACCAAGGGAACCCTCCAGTTTGCTAGCAGAGCCAAGCGCATTACCAATTGTGCTCAAGTGAATGAGgtctgttcattattctctgcattttcactttcacttttaagtgaatatttttagcatt-tattttgcctttgaaatccatccctctagtatcaccaggagt--