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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTACTTCCTTGGAGGTTTTGGGGAGGATGGCCGCGGGATGAACGGTCTCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaatgcttgcttattgtgtgatgtgaagcttgttggtttacttgcagccatcttggtagaatttttaggaaataaatcttggattttgttgca...

Basic information

species Glycine max
transcript GLYMA17G35070.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192313154|gb|FK004716.1|FK004716
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAAT
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAAT
EST: gi|151395440|gb|EV265317.1|EV265317
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTGTGGT
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: gi|151404541|gb|EV274355.1|EV274355
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: gi|192315385|gb|FK007759.1|FK007759
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTCGGGATCCCT                         ATAGGAATAGTAATAAAGGCA
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCA
EST: gi|192315386|gb|FK007760.1|FK007760
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTCGGGATCCCT                         ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: gi|213614162|gb|DB964906.1|DB964906
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCG
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCG
EST: gi|209704322|gb|BW683554.1|BW683554
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATG
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATG
EST: gi|192320999|gb|FK013501.1|FK013501
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: gi|209704323|gb|BW683555.1|BW683555
EST:     TGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATGGT
genomic: TGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: gi|209699754|gb|BW655780.1|BW655780
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATGGT
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: gi|192320998|gb|FK013500.1|FK013500
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: gi|209699755|gb|BW655781.1|BW655781
EST:     TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATGGT
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: gi|213606089|gb|DB982390.1|DB982390
EST:     TCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT                         ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATGGT
genomic: TCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTTACTTCCTTGGAGGTTTTGGGGAGGATGGCCGCGGGATGAACGGTCTCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaatgcttgcttattgtgtgatgtgaagcttgttggtttacttgcagccatcttggtagaatttttaggaaataaatcttggattttgttgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaataa