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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTGACCAAACGGTTTTCGTGACTGGCAAGGATGTTCCATTGGAGGGTGTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaactttttttttcttcctttaaagttttcgattttattcataaagtagaaagcttgttgcagaatttcaaatgggttatcatttatcaacttatcatgcatgtgttgtag

Basic information

species Glycine max
transcript GLYMA17G35070.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192313154|gb|FK004716.1|FK004716
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|151395440|gb|EV265317.1|EV265317
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|151404541|gb|EV274355.1|EV274355
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|192315385|gb|FK007759.1|FK007759
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|10844188|gb|BF067515.1|BF067515
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|192315386|gb|FK007760.1|FK007760
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|213614162|gb|DB964906.1|DB964906
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTCTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|209704322|gb|BW683554.1|BW683554
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|7326699|gb|AW620497.1|AW620497
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|192320999|gb|FK013501.1|FK013501
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|192313155|gb|FK004717.1|FK004717
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|209699754|gb|BW655780.1|BW655780
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTTGTGTTTT
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTT-GTGTTTT
EST: gi|192320998|gb|FK013500.1|FK013500
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTGTGTTTTC
EST: gi|209699755|gb|BW655781.1|BW655781
EST:     GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGG                         GCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTGTTTTGTGTTTT
genomic: GTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaacttttt ... tgtgttgtagGCGTGTGGCTCTGCTAGCTGGTGCGGATGTGTTGGCCTTG-TTTGTGTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACTGACCAAACGGTTTTCGTGACTGGCAAGGATGTTCCATTGGAGGGTGTCATCCAGTTCGAGAAACCAGCCTCTTCTCCTCCTTTTGAAAAATGGGGgtaactttttttttcttcctttaaagttttcgattttattcataaagtagaaagcttgttgcagaatttcaaatgggttatcatttatcaacttatcatgcatgtgttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC