1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tattgggaaaataaagtatgtattgttgcacaatcgttttctttttccattgacctttgacaaaacagatcccatttatctctttccgacttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGTTTTGTATTTGTGAGTCTGGGAAGCACTGCTGTTTTACTTGTTACATTCA
species | Glycine max |
transcript | GLYMA17G35070.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATEST: gi|151395440|gb|EV265317.1|EV265317
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAAT
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTGTGGTEST: gi|151404541|gb|EV274355.1|EV274355
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGTEST: gi|192315385|gb|FK007759.1|FK007759
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTCGGGATCCCT ATAGGAATAGTAATAAAGGCAEST: gi|192315386|gb|FK007760.1|FK007760
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCA
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTCGGGATCCCT ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGTEST: gi|213614162|gb|DB964906.1|DB964906
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGEST: gi|209704322|gb|BW683554.1|BW683554
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCG
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATGEST: gi|192320999|gb|FK013501.1|FK013501
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATG
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGTEST: gi|209704323|gb|BW683555.1|BW683555
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: TGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATGGTEST: gi|209699754|gb|BW655780.1|BW655780
genomic: TGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATGGTEST: gi|192320998|gb|FK013500.1|FK013500
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGTEST: gi|209699755|gb|BW655781.1|BW655781
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATGGTEST: gi|213606089|gb|DB982390.1|DB982390
genomic: TCTCGAAGGGTGTCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
EST: TCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCT ATAGGAATAGTAATAAGGGCAGCAACATCGGGTCATCTACCGAATTATGGT
genomic: TCGTTGCTACTGCGAAGTCATGGGCTGTTGGGATCCCTgtaagttgaa ... ttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGT
tccattgacctttgacaaaacagatcccatttatctctttccgacttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGTTTTGTATTTGTGAGTCTGGGAAGCACTGCTGTTTTACTTGTTACATTCA
tttatctctttccgac CT-rich tract
atttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgggaaaataaagtatgtattgttgcacaatcgttttctttttccattgacctttgacaaaacagatcccatttatctctttccgacttcttggcagATAGGAATAGTAATAAAGGCAGCAACATCGGGTCATCTACCGAATTATGGTTTTGTATTTGTGAGTCTGGGAAGCACTGCTGTTTTACTTGTTACATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT