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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatatcagcatcatgtaccatgtgattcataagctccagtttctttagctacttgagattgtttttaacctgccagttggtagtttggtattttg...

Basic information

species Glycine max
transcript GLYMA17G34990.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34990.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0008g00650.t01 (Vitis vinifera), 5'ss of exon 9
TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatatcagcatcatgtaccatgtgattcataagctccagtttctttagctacttgagattgtttttaacctgccagttggtagtttggtattttg---
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TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGgttagtctgttaaatctacacaa-atttgcagaaggacattctttcttctatgtgactttacacaaacttgattatgaggagaggca--caaataactcaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31457746|gb|CD399774.1|CD399774
EST:     TGCAATGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATTATCGGACCAGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATA
genomic: TGCAATGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatat ... ttttatttagGTCTTCATCATCGGACCAGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATA
EST: gi|5760980|gb|AI966343.1|AI966343
EST:     TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATCATCGGACCAGTGA
genomic: TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatat ... ttttatttagGTCTTCATCATCGGACCAGTGA
EST: gi|193611774|gb|FK565389.1|FK565389
EST:     TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATCATCGGACCAGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATA
genomic: TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatat ... ttttatttagGTCTTCATCATCGGACCAGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATA
EST: gi|9901090|gb|BE610058.1|BE610058
EST:     TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATCATCGGACCAGTGA
genomic: TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatat ... ttttatttagGTCTTCATCATCGGACCAGTGA
EST: gi|254339166|gb|GR847883.1|GR847883
EST:     TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATCATCGGACCAGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATA
genomic: TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatat ... ttttatttagGTCTTCATCATCGGACCAGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATA