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gtagtgtggtactatgtgtcgtggtatccattgaatgtttttgaagccatgatttttataatgacctcattattctaaacataatgattaataattcctaataagttcctttgagtcatttggttcgtcccttgttaactttgagggtttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
species | Glycine max |
transcript | GLYMA17G34990.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATGACTACATTTCATT-GTTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACEST: gi|5760980|gb|AI966343.1|AI966343
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGAC
EST: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGEST: gi|9901090|gb|BE610058.1|BE610058
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
EST: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGEST: gi|254339165|gb|GR847882.1|GR847882
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
EST: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGEST: gi|20498112|gb|BQ273042.1|BQ273042
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
EST: AGATGACTACATTTCATTTGGTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAEST: gi|33390324|gb|CA853519.1|CA853519
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAA
EST: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGEST: gi|207747307|gb|GD721258.1|GD721258
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
EST: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTA-T-T- GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGEST: gi|18040715|gb|BM309009.1|BM309009
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
EST: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAAGGAAGAAGTTCGTGTCCTCCTTTCGACAGEST: gi|192296230|gb|FG991556.1|FG991556
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAA-GGAAGAAGTTCGTGTCCTCCTT-CGACAG
EST: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGEST: gi|209709559|gb|BW661886.1|BW661886
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
EST: AGATGACTACATTTCATT-GTTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGEST: gi|254336075|gb|GR841400.1|GR841400
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCG
EST: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
agttcctttgagtcatttggttcgtcccttgttaactttgagggtttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
tgttaac putative branch site (score: 2)
ttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgtggtactatgtgtcgtggtatccattgaatgtttttgaagccatgatttttataatgacctcattattctaaacataatgattaataattcctaataagttcctttgagtcatttggttcgtcccttgttaactttgagggtttgcatgtagGCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG
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