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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggttttagaataatcttggttgaaaagaataatctaatttacttttgtactaaaaagtttaaatcgttggttctgcatgcatgtttgatttgatcta...

Basic information

species Glycine max
transcript GLYMA17G34990.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760980|gb|AI966343.1|AI966343
EST:     GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG                         GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: gi|9901090|gb|BE610058.1|BE610058
EST:     GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG                         GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: gi|254339165|gb|GR847882.1|GR847882
EST:     GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG                         GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: gi|33390324|gb|CA853519.1|CA853519
EST:     GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG                         GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: gi|207747307|gb|GD721258.1|GD721258
EST:     GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG                         GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: gi|18040715|gb|BM309009.1|BM309009
EST:     GCAAATCATATGATGAGAAAGGAAGAAGTTCGTGTCCTCCTTTCGACAG                         GACCCCAAGTTTTTGGAGACACAGACCATTATCTGAACAAATGGGCCGTG
genomic: GCAAATCATATGATGAGAA-GGAAGAAGTTCGTGTCCTCCTT-CGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTT-GGAGACACAGACCATTATCTGAACAAATGGTCCGTG
EST: gi|192296230|gb|FG991556.1|FG991556
EST:     GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG                         GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: gi|254336075|gb|GR841400.1|GR841400
EST:     GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG                         GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggttttagaataatcttggttgaaaagaataatctaatttacttttgtactaaaaagtttaaatcgttggttctgcatgcatgtttgatttgatcta

- - - - - - - -  AAGGAA
- - - - - - - - -  GGAAGA
- - - - - - - - - -  AAGAAG
- - - - - - - - - - - AGAAGT