Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgctttcttccttgcttgctctggcccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaacaaagtgtttgagtggcttgacttgtggtattaggcatttaccattttgtctggccatttaaagctcttataaacttcttgttgtttactag

Basic information

species Glycine max
transcript GLYMA17G34990.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34990.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G142984_T01 (Zea mays), 5'ss of exon 3
--------------------------------TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgctttcttccttgcttgctctggcccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaacaaagtgtttgagtggcttgacttgtggtattaggcatttaccattttgtctggccatttaaagctcttataaacttcttgttgtttactag
                                ||| ||||| || ||| | || |||||   ||| |||||||| |||||||||||| || | ||||| ||||| ||||||||||| ||| |||||||||||||  || ||   || ||||       |  | ||||||| ||   ||| ||||||   | | | |  ||||  |    ||    ||    |  ||| | | | | |   |||                                                                        
CTTGCATTCCCTGATGCTGTTTACCTAGTTGATGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTgtaagcccgcacttgagtctgatcatatcaccaaagttattcatgattgtaaaagggacagtgaggtgcctaat--gttggatttgagaacttttagcttgctatgtttcct-ttttgtccttttaggagattgtaaa---cttgactaactagattaaactttatcacttttttgcag---------------------------------------------------------------------

upper sequence: GLYMA17G34990.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G142984_T02 (Zea mays), 5'ss of exon 3
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgctttcttccttgcttgctctggcccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaacaaagtgtttgagtggcttgacttgtggtattaggcatttaccattttgtctggccatttaaagctcttataaacttcttgttgtttactag
||| ||||| || ||| | || |||||   ||| |||||||| |||||||||||| || | ||||| ||||| ||||||||||| ||| |||||||||||||  || ||   || ||||       |  | ||||||| ||   ||| ||||||   | | | |  ||||  |    ||    ||    |  ||| | | | | |   |||                                                                        
TGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTGTAAGCCCGCACTTGAGTCTGATCATATCACCAAAGTTATTCATGATTGTAAAAGGGACAGTGAGgtgcctaat--gttggatttgagaacttttagcttgctatgtttcct-ttttgtccttttaggagattgtaaa---cttgactaactagattaaactttatcacttttttgcag---------------------------------------------------------------------

upper sequence: GLYMA17G34990.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G081924_T01 (Zea mays), 5'ss of exon 3
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgctttcttccttgcttgctctggcccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaacaaagtgtttgagtggcttgacttgtggtattaggcatttaccattttgtctggccatttaaagctcttataaacttcttgttgtttactag
||| ||||| || ||| | || |||||   ||| |||||||| |||||||||||| || | ||||| ||||| ||||||||||| ||| ||||||| |||||  || |||   |  ||||    |||  | ||||||| ||    || ||||||   | | | |  |||| ||    ||    ||       | | | | | | |   |  |                                                                       
TGCTATTGAGGGTGGAAAAGAACTTATTCAAGCTTGTAAGCCCGCACTTGAGTCTGATCATATCACCAAAGTTATTCATGATTGTAAAAGGGACAGCGAGgtgcctaatta--tgcattgggaacttt-tagcttgctatgttttct-ttttgtccttttaggagattgtaga---cttgactaactagtttagactttatcactttttgcag----------------------------------------------------------------------

upper sequence: GLYMA17G34990.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G25910.2 (Arabidopsis thaliana), 5'ss of exon 3
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgctttcttccttgcttgctctggcccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaacaaagtgtttgagtggcttgacttgtggtattaggcatttaccattttgtctggccatttaaagctcttataaacttcttgttgtttactag
||  || ||||| ||||||| | |||| | |||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| || ||||||||||| |||||  | |||| |  |||  |    |   |    || |   | | | || ||||    ||  ||   ||| ||| ||  |    |                                                                                             
TGTCATCGAAGGTGGAGAGGTGATTATGAAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaactttttgttgacttgttattatagct--catgacatatttatagtttatg--acaacatggataattttttttgtactacag--------------------------------------------------------------------------------------------

upper sequence: GLYMA17G34990.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g00650.t01 (Vitis vinifera), 5'ss of exon 3
TGCGATTGAAGGGGGAGAGGAGCTTATCATAGCGTGTAAGCCTGCACTTGAGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatttatttgattgctttcttccttgcttgctctggcccctcttttgtatatgttgaaatttgtggaatgtttattcaaaggaaacaaagtgtttgagtggcttgacttgtggtattaggcatttaccattttgtctggccatttaaagctcttataaacttcttgttgtttactag
||| ||| | |||||||||  |||||| | ||| ||||||||||||||||| |||| ||||||||||||||| ||||| ||||||||||| || || ||||||||| ||| |||| |||   |||| | | |   || |   |     | | | |    |||||  || |    ||||  ||   ||                                                                                                
TGCTATTCAGGGGGGAGAGATGCTTATGAAAGCCTGTAAGCCTGCACTTGAATCTAGTTACATCACAAAAGTTATTCACGATTGCAAACGAGATAGCGAGgtctctaattgattttatttacttctgcat-gtcagcacatacat---tgtggcagtctttgaatcttat----tgttattttgtag------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713753|gb|BW681879.1|BW681879
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCGTCAAGTTAAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|193336183|gb|FK298083.1|FK298083
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTATTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCA
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGT-ACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCA
EST: gi|5760980|gb|AI966343.1|AI966343
EST:     CGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
genomic: CGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|15663150|gb|BI700521.1|BI700521
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCATCAAGTTAAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|254339165|gb|GR847882.1|GR847882
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|20498112|gb|BQ273042.1|BQ273042
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCGTCAAGTTAAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|33390324|gb|CA853519.1|CA853519
EST:     AAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
genomic: AAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|208077136|gb|GD877815.1|GD877815
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTATACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|18040715|gb|BM309009.1|BM309009
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|192296230|gb|FG991556.1|FG991556
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|298193107|gb|HO033541.1|HO033541
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCATCAAGTTAAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|209709559|gb|BW661886.1|BW661886
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCGTCAAGTTAAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|298194665|gb|HO043137.1|HO043137
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACGGTGAG                         GCATTGTACTTTCAGTTTGGCATCAAGTTAAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
EST: gi|254336075|gb|GR841400.1|GR841400
EST:     AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAG                         GCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG
genomic: AGTCTAATTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGgtctctgatt ... tgtttactagGCATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG