1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaggtcaatgagacgagtttcatgggctaacaaagaagaaatatgaatcatttatgtaatctctatcatctagtgatgttatttgtaaatgttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTACATTTATCACCAAATGATGG
species | Glycine max |
transcript | GLYMA17G34990.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCTEST: gi|33390324|gb|CA853519.1|CA853519
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCTEST: gi|207747307|gb|GD721258.1|GD721258
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCTEST: gi|18040715|gb|BM309009.1|BM309009
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: GCAAATCATATGATGAGAAAGGAAGAAGTTCGTGTCCTCCTTTCGACAG GACCCCAAGTTTTTGGAGACACAGACCATTATCTGAACAAATGGGCCGTGEST: gi|192296230|gb|FG991556.1|FG991556
genomic: GCAAATCATATGATGAGAA-GGAAGAAGTTCGTGTCCTCCTT-CGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTT-GGAGACACAGACCATTATCTGAACAAATGGTCCGTG
EST: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCTEST: gi|254336075|gb|GR841400.1|GR841400
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
EST: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAG GACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
genomic: GCAAATCATATGATGAGAAGGAAGAAGTTCGTGTCCTCCTTCGACAGgttggtttta ... gttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCT
aatcatttatgtaatctctatcatctagtgatgttatttgtaaatgttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTACATTTATCACCAAATGATGG
ttttgtc CT-rich tract
ttatttgtaaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggtcaatgagacgagtttcatgggctaacaaagaagaaatatgaatcatttatgtaatctctatcatctagtgatgttatttgtaaatgttttgtcagGACCCCAAGTTTTGGAGACACAGACCATTATCTGAACAAATGGTCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTACATTTATCACCAAATGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -caatgag
- - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - -aagaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt