1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catagaattcttgcatttgcatattaaatcttttgtacgtcttcatccttgtgttctgttgattggttaatcacttaatcatacttcttgtttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG
species | Glycine max |
transcript | GLYMA17G34990.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTGTACTTTCAGTTTGGCGTCAAGTTAAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|193336183|gb|FK298083.1|FK298083
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: ATTATTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGEST: gi|15663150|gb|BI700521.1|BI700521
genomic: ATTGT-ACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAG
EST: CATTGTACTTTCAGTTTGGCATCAAGTTAAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|254339165|gb|GR847882.1|GR847882
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|20498112|gb|BQ273042.1|BQ273042
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: CATTGTACTTTCAGTTTGGCGTCAAGTTAAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|33390324|gb|CA853519.1|CA853519
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|208077136|gb|GD877815.1|GD877815
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: CATTATACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|18040715|gb|BM309009.1|BM309009
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|298193107|gb|HO033541.1|HO033541
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: CATTGTACTTTCAGTTTGGCATCAAGTTAAACAACGTAGTGGATACCCAG ACTGCTTGTTCACTTATAGAGEST: gi|192296230|gb|FG991556.1|FG991556
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAG
EST: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|209709559|gb|BW661886.1|BW661886
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: CATTGTACTTTCAGTTTGGCGTCAAGTTAAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|298194665|gb|HO043137.1|HO043137
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: CATTGTACTTTCAGTTTGGCATCAAGTTAAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATEST: gi|254336075|gb|GR841400.1|GR841400
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
EST: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAG ATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
genomic: CATTGTACTTTCAGTTTGGCATCAAGTTGAACAACGTAGTGGATACCCAGgtgagctttc ... tttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGAT
tccttgtgttctgttgattggttaatcacttaatcatacttcttgtttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG
acttaat putative branch site (score: 4)
cttcttgttt putative PPT
ttaatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catagaattcttgcatttgcatattaaatcttttgtacgtcttcatccttgtgttctgttgattggttaatcacttaatcatacttcttgtttggttcagATTGCTTATTCACTTATAGAGGAGCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - -cttgcat
- - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - tctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcttg