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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAGTTGGACATTCATTCAGTTCAGTCTCAATCACATGGCTTCTTCTTCTCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttcgcaacaccttcatctattttcttcttcaccgatttagggcttctttttcttcatttcaaaacttaaaaagaaaacaaatccgataactcc...

Basic information

species Glycine max
transcript GLYMA17G34990.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713753|gb|BW681879.1|BW681879
EST:     TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
EST: gi|15663150|gb|BI700521.1|BI700521
EST:     TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
EST: gi|254339165|gb|GR847882.1|GR847882
EST:     TCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: TCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
EST: gi|20498112|gb|BQ273042.1|BQ273042
EST:     TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
EST: gi|18040715|gb|BM309009.1|BM309009
EST:     ATCTCACACATCTTCCTCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: ATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
EST: gi|298193107|gb|HO033541.1|HO033541
EST:     TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
EST: gi|192296230|gb|FG991556.1|FG991556
EST:     TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
EST: gi|209709559|gb|BW661886.1|BW661886
EST:     TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
EST: gi|298194665|gb|HO043137.1|HO043137
EST:     TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
EST: gi|254336075|gb|GR841400.1|GR841400
EST:     TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAG                         GTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA
genomic: TCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttc ... attgaattagGTGATAGTGAGAAGCGCGTGGAGGACGATGAATCGCGCGTTCCGATTCACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTAGTTGGACATTCATTCAGTTCAGTCTCAATCACATGGCTTCTTCTTCTCCCTCTCACTCATATCTCACACATCTTCCTCTTCATCCCTCTCACCAAGgttactcttcgcaacaccttcatctattttcttcttcaccgatttagggcttctttttcttcatttcaaaacttaaaaagaaaacaaatccgataactcc

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