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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGgttagttttgttttatgcattaagttacatattattggtagggagaccgcaggaaggatgcaaatgtatggacttcttttttttgtgattttcttgaaaa...

Basic information

species Glycine max
transcript GLYMA17G34730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 8
TTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGgtta-gttttgttttatgcattaagttacat---attattggtagggagaccgcaggaaggatgcaaatgtatggacttcttttttttgtgattttcttgaaaa
|||| |||||||| ||  || ||||||| ||||| || || || ||||||||| |||||||| ||||| || |||||||  | ||||||||||| ||||||| | |   | ||||       ||    |||   |  ||   |  |    | |     | |  | | |  ||  |   |  || |     | ||   | |    
TTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAAGgtcaagacctattttcaattccaaaaggcattagaagatatatttgttatctgtttctaaggagtataattaaagttcttgttatcaaaagtttgcatcg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329480|gb|FK022200.1|FK022200
EST:     GCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAG                         AGGCAGTTTATATAGGCTATTACATCGACCCAATCTTCGACTTGATGAGAA
genomic: GCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGgttagttttg ... tggcatacagAGGCAGTTTATATAGGCTATTACATCGACCCAATCTTCGACTTGATGAGAA