Sequence
atgc intronic sequence ATGC exonic sequenceGAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAAgtaagctattgtctctatatgcacatgtataaggcagtcatatgcagatataatattcatgcccatttattgctttttgcag
Basic information
species | Glycine max |
transcript | GLYMA17G34730.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G34730.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g12810.3 (Oryza sativa), 5'ss of exon 5
GAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAAgtaag----ctattgtctctatatgca---catgtataaggcagtcatatgcagatataatattcatgcccatttattgctt---tttgcag--------------
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GAAGTTGCAGTGAAGAAATTTCTTGACCAGGATTTATCGGGTGTTGCACTAGATCAATTCAAATGTGAAgtgagtccacttttaagatttaatgcattgcatctcttttggagtt-tgtgtataaatattatcgactttatttcctcaactgagtgtgcattccttctcttcaag
upper sequence: GLYMA17G34730.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G11850.1 (Arabidopsis thaliana), 5'ss of exon 7
GAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAAgtaagct---attgtctctatatgcacatgta------taaggcagtcatatgcagatataatattcatgccca-------tttattgctttttgcag
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GAAGTGGCTGTTAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCATTGACACAGTTCAAATCTGAAgtaactccaaatcatttaaccatagatatcttattttctgtaaaaattacctgcaataacgttaatcatattcggaatgtttttatctattctgatag
upper sequence: GLYMA17G34730.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 7
GAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAAgtaagctattgtc-tctatatgc-acat----gtat-----aaggcagtca-----------tatgcagatata-atattcatgcccatttattgctttttgcag
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GAGGTTGCTGTGAAGAAGTTCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAGgtaagtgcctgaaatttacatcttacattataatattaatcaaaatggtcaattcagttggctttataaacattcaaattaataccttctggttgcttcatacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192329480|gb|FK022200.1|FK022200EST: TTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAA GTTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGA
genomic: TTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAAgtaagctatt ... ctttttgcagGTTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAAgtaagctattgtctctatatgcacatgtataaggcagtcatatgcagatataatattcatgcccatttattgctttttgcag
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