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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctattgtctctatatgcacatgtataaggcagtcatatgcagatataatattcatgcccatttattgctttttgcagGTTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAA

Basic information

species Glycine max
transcript GLYMA17G34730.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34730.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 3'ss of exon 7
----------------------gtaagctattgtctctatatgcacatgta--taaggcagtcatatgcagatataatattcatgcccatttattgctttttgcagGTTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAA
                       ||   |||  | |  ||    |     |  | ||   |   |||  | ||  || ||| || ||   |  ||||||  | |||||||| |||||||| ||  || ||||||| ||||| || || || ||||||||| |||||||| ||||| || |||||||  | ||||||||||| ||||
gtaagtgcctgaaatttacatcttacattataatattaatcaaaatggtcaattcagttggctttataaacattcaa-attaataccttctggttgcttcatacagGTTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329480|gb|FK022200.1|FK022200
EST:     TTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAA                         GTTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGA
genomic: TTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAAgtaagctatt ... ctttttgcagGTTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaggcagtcatatgcagatataatattcatgcccatttattgctttttgcagGTTGAGATCATGTTAAGGCTGCGGCATCCGAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAA
                                          ttgcttttt  CT-rich tract
                  agatataatattcat  TA-rich tract