Sequence
atgc intronic sequence ATGC exonic sequenceTGCAGGTTGTTGGAGCTGTTGGATTTCAAAATAAACGGCTTGAAATTCCAGAAGATGTCAATCCAGTAGTAGCACAGATAATACGTGATTGCTGGCAAACgtaagttctatttctgtacttacgatttctgattgttactttagtttctagcactctgaatatcaaatgaagatatgaaatatgtgcagtaaccatgttc...
Basic information
species | Glycine max |
transcript | GLYMA17G34730.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G34730.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G11850.1 (Arabidopsis thaliana), 5'ss of exon 12
TGCAGGTTGTTGGAGCTGTTGGATTTCAAAATAAACGGCTTGAAATTCCAGAAGATGTCAATCCAGTAGTAGCACAGATAATACGTGATTGCTGGCAAACgtaagttctatttctgtacttacgatttctgattgttactttagtttctagcact-ctgaatatcaaatgaagatatgaaatatgtgcagtaaccatgttc------------------------------------------------------------------------------------
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TGCAAGTCGTTGGAGCTGTGGGATTCCAGAATCGACGCCTTGAAATCCCAGATGATATCGATCTAACTGTGGCACAGATAATCCGTGAATGTTGGCAAACgtaagttcattttcaaaactca-aatccttaaaatttagcaaaaagtaattcactactccttattaga--gctgtatgatacatgtatccttatgattagctttgtagtgtaaaccatcagtattgaaataggtaatcggtcatcatacattttaggtgaggttaagcttgtgattgttatgcag
upper sequence: GLYMA17G34730.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 13
TGCAGGTTGTTGGAGCTGTTGGATTTCAAAATAAACGGCTTGAAATTCCAGAAGATGTCAATCCAGTAGTAGCACAGATAATACGTGATTGCTGGCAAACgtaagttct-atttctgtacttacgatttctgattgttactttagtttctagcactctgaatatcaaatgaagatatgaaatatgtgcagtaaccatgttc-
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TGCAGGTTGTTGGAGCTGTTGGATTTCAAGACAGACGCCTAGAAATCCCAGAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGTgtaagttctcgcccttgtaactattattcatt-ctgttactcca-cacgtatcagatgtacaatggactcagaattaggtgatcatttagatctcatcttaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254315669|gb|GR825478.1|GR825478EST: GAAGATGTCAATCCAGTAGTAGCACAGATAATACGTGATTGCTGGCAAAC GGAGCCACACTTGCGGCCATCATTCTCACAACTGATGTCTCGTCTTTACCG
genomic: GAAGATGTCAATCCAGTAGTAGCACAGATAATACGTGATTGCTGGCAAACgtaagttcta ... tttgatgcagGGAGCCACACTTGCGGCCATCATTCTCACAACTGATGTCTCGTCTTTACCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAGGTTGTTGGAGCTGTTGGATTTCAAAATAAACGGCTTGAAATTCCAGAAGATGTCAATCCAGTAGTAGCACAGATAATACGTGATTGCTGGCAAACgtaagttctatttctgtacttacgatttctgattgttactttagtttctagcactctgaatatcaaatgaagatatgaaatatgtgcagtaaccatgttc
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG