1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtagtaatttttttattttttttttgctgagttttacaaaggtagtaataccgtagtgctatattgaatgtccgtgttgttttatctttctactaaataaaatcatctgcctgaaatggttttcatatttcctatatttgatactttctatttcacacacattcattgttataaatatttttacag
species | Glycine max |
transcript | GLYMA17G12750.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAG GAATATATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCAAAGTTGGACEST: gi|22928016|gb|BU545155.1|BU545155
genomic: GAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtagtaattt ... atttttacagGAATATATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCAAAGTTGGAC
EST: GAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAG GAATATATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCAAAGTTGGACEST: gi|58025010|gb|CX711751.1|CX711751
genomic: GAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtagtaattt ... atttttacagGAATATATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCAAAGTTGGAC
EST: GAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAG GAATATATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCAAAGTTGGAC
genomic: GAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtagtaattt ... atttttacagGAATATATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCAAAGTTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCATTACCATATCCTCACCAAGAGGGAGCTTACAAAGgtagtaatttttttattttttttttgctgagttttacaaaggtagtaataccgtagtgctatattgaatgtccgtgttgttttatctttctactaaataaaatcatctgcctgaaatggttttcatatttcctatatttgatactttctatttcacacacattcattgttataaatatttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT