Sequence
atgc intronic sequence ATGC exonic sequence...taaatgctacatgatgttagcaaacaacaatatggatgttattctttgggctgtggaagtctttaatcttcataaagctaattggtgtttaattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
Basic information
species | Glycine max |
transcript | GLYMA17G12750.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G12750.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 3'ss of exon 3
taaatgctacatgatgttagcaaacaacaatatggatgttattctttgggctgtggaagtctttaatcttcataaagctaattggtgtttaattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
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gatgcctttacttttgttgttcttttttctttcctaaatcttgttgtaacttgggcttgttcttttttctttggtctcaagattgtttttcattttatagATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAG
upper sequence: GLYMA17G12750.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ26224 (Selaginella moellendorffii), 3'ss of exon 1
taaatgctacatgatgttagcaaacaacaatatggatgttattctttgggctgtggaagtctttaatcttcataaagctaattggtgttta-attttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
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---------------gtaagtctttgctagaatcgatctt-tcttccgtgctaagtaaga---aaattcttctttggttttttacccttgatgcgttccagGCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAG
upper sequence: GLYMA17G12750.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ14522 (Selaginella moellendorffii), 3'ss of exon 1
taaatgctacatgatgttagcaaacaacaatatggatgttattctttgggctgtggaagtctttaatcttcataaagctaattggtgtttaattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
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---------------gtaagtctttgctagaatcgatctt-tcttccgtgctaagtaagaa--aattcttctttggttttttccccttggtgcgttccagGCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151409807|gb|EV279615.1|EV279615EST: TGGATTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAG AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCC
genomic: TGGATTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAGgtgaaaactc ... aattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgggctgtggaagtctttaatcttcataaagctaattggtgtttaattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
tttaatcttcataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaatgctacatgatgttagcaaacaacaatatggatgttattctttgggctgtggaagtctttaatcttcataaagctaattggtgtttaattttgtagAGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG
- - tgctaca
- - - - - -tgatgtt
- - - - - - - - - -gcaaaca
- - - - - - - - - - - - - - - - tggatgt
- - - - - - - - - - - - - - - - - - - - - - - - -gctgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attggtg